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Postgres - FATAL: database files are incompatible with server

After restarting my MacBook Pro I am unable to start the database server:

could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/tmp/.s.PGSQL.5432"?

I checked the logs and the following line appears over and over again:

FATAL:  database files are incompatible with server
DETAIL:  The data directory was initialized by PostgreSQL version 9.2, which is not compatible with this version 9.0.4.

9.0.4 was the version that came preinstalled on the mac, 9.2[.4] is the version I installed via Homebrew.

As mentioned, this used to work before the restart, so it can't actually be a compiling issue. I also re-ran initdb /usr/local/var/postgres -E utf8 and the file still exists.

How do you start postgres? Are you sure your startscript points to the new version? Because based on the error messages I think both versions are installed side by side now.
pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start - and the response is server starting
When you search for files named pg_ctl I'm pretty sure you're going to find 2 copies. And the one that matches which pg_ctl will be the old version, and the other will be the new version.
running pg_ctl --version gives pg_ctl (PostgreSQL) 9.2.4
@EvanCarroll Sure did then. I think now they've moved it to bundle it inside Server.app and hidden it to use a non-default port and unix socket directory. Finally!

G
Gowtham

If you recently upgraded postgres to latest version, you can run the below command to upgrade your postgres data directory retaining all data:

brew postgresql-upgrade-database

The above command is taken from the output of brew info postgres


Works for 11 to 12 as well.
Can verify that this works fine when moving from 12 to 13 as well.
This is one of those "So we meet again" answers I have to look up every 6-12 months.
This worked for me with only one caveat: I had to make sure that the postgresql homebrew process was off first. (brew services stop postgresql). Then I would execute, brew postgresql-upgrade-database -- and then of course I would run brew services start postgresql. If I don't do this I get this error, "lock file "postmaster.pid" already exists", which I see in these logs "cat /usr/local/var/log/pg_upgrade_server.log"
Works for 13 => 14 as well.
M
Meekohi

If you are looking for the nuclear option (delete all data and get a fresh database), you can do:

rm -rf /usr/local/var/postgres && initdb /usr/local/var/postgres -E utf8

and then you'll need to rake db:setup and rake db:migrate from your Rails app to get setup again.


If the above still doesn't work (which was the case for me), try giving a new data directory name to initdb, e.g. /usr/local/var/postgres95.
btw, immediately after this you'll probably need to run createuser -s your_rails_app to create the rails' postgres user. See stackoverflow.com/questions/11919391/…
Or if you're nervous like me and want to go nuclear but keep a backup in the bunker just in case, do mv /usr/local/var/postgres /usr/local/var/postgres_backup && initdb /usr/local/var/postgres -E utf8 instead!
g
gdurelle

Try this : https://gist.github.com/joho/3735740

It worked perfectly for me. In the end it also generates you 2 bash scripts to check your DB and remove the old cluster. Really Awesome.

see: http://www.postgresql.org/docs/9.2/static/pgupgrade.html to understand more.


Worked perfectly for me with migration from 9.4 to 9.5.
Also worked for me with migration from 9.3.4 to 9.5.2.
Here are the steps for updating 9.5.5 to 9.6.1 using Homebrew (macOS): gist.github.com/giannisp/b53a76047b07751ed3ade3c1db1d2c51
That should definitely be the best answer!! And no data loss.
Link only answers are frowned upon
T
T J

Found on internet, this solution work fine for me.

When I tried to start postgresql server after upgrade to OS X 10.10 Yosemite, I encountered with a next problem:

pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start

could not connect to server: No such file or directory
Is the server running locally and accepting
connections on Unix domain socket "/var/pgsql_socket/.s.PGSQL.5432"?

Okay, lets take a look into server logs:

cat /usr/local/var/postgres/server.log

FATAL: database files are incompatible with server
DETAIL: The data directory was initialized by PostgreSQL version 9.2, which is not compatible with this version 9.3.5.

So, we need to follow a few steps after upgrade postgresql:

launchctl unload -w ~/Library/LaunchAgents/homebrew.mxcl.postgresql.plist

mv /usr/local/var/postgres /usr/local/var/postgres92

brew update

brew upgrade postgresql

initdb /usr/local/var/postgres -E utf8

pg_upgrade -b /usr/local/Cellar/postgresql/9.2.3/bin -B /usr/local/Cellar/postgresql/9.3.5_1/bin -d /usr/local/var/postgres92 -D /usr/local/var/postgres

cp /usr/local/Cellar/postgresql/9.3.5_1/homebrew.mxcl.postgresql.plist ~/Library/LaunchAgents/

pg_ctl -D /usr/local/var/postgres -l /usr/local/var/postgres/server.log start

rm -rf /usr/local/var/postgres92

That's it.


I have used the above steps to upgrade from 9.53 to 10.0. The pg_upgrade command has upgraded a bit. The new command is pg_upgrade -b /usr/local/Cellar/postgresql/9.5.3/bin/ -B /usr/local/Cellar/postgresql/10.0/bin -d /usr/local/var/postgres95 -D /usr/local/var/postgres
better solution below
p
peresleguine

If you want to keep the previous version of postgres, use brew switch:

$ brew info postgresql

postgresql: stable 10.5 (bottled), HEAD
Object-relational database system
https://www.postgresql.org/
Conflicts with:
  postgres-xc (because postgresql and postgres-xc install the same binaries.)
/usr/local/Cellar/postgresql/9.6.3 (3,259 files, 36.6MB)
  Poured from bottle on 2017-07-09 at 22:15:41
/usr/local/Cellar/postgresql/10.5 (1,705 files, 20.8MB) *
  Poured from bottle on 2018-11-04 at 15:13:13

$ brew switch postgresql 9.6.3
$ brew services stop postgresql
$ brew services start postgresql

Otherwise, consider this brew command to migrate existing data: brew postgresql-upgrade-database. Check out the source code.


A
Anna

As @Gowtham mentioned, you can solve this problem by executing a brew command

brew postgresql-upgrade-database The above command is taken from the output of brew info postgres

However, don't forget to stop the postgres service before executing it, use the following command: `brew services stop postgresql

you may have to start the service again.

So the final order of commands are:

brew services stop postgresql
brew postgresql-upgrade-database
brew services start postgresql  

Thanks, that was very helpful
PS, don't forget to CLOSE your virtual environment first, if you're using one
o
olliezhu

Similar to these answers (1, 2), my Postgres database files were incompatible to my Postgres version after upgrading to postgresql 13.3.

Unfortunately, upgrading my Postgres data directory failed.

$ brew postgresql-upgrade-database
...
Setting next OID for new cluster
*failure*

Consult the last few lines of "pg_upgrade_utility.log" for
the probable cause of the failure.
Failure, exiting
Error: Upgrading postgresql data from 12 to 13 failed!
==> Removing empty postgresql initdb database...
==> Moving postgresql data back from /usr/local/var/postgres.old to /usr/local/var/postgres...
Error: Failure while executing; `/usr/local/opt/postgresql/bin/pg_upgrade -r -b /usr/local/Cellar/postgresql@12/12.7/bin -B /usr/local/opt/postgresql/bin -d /usr/local/var/postgres.old -D /usr/local/var/postgres -j 8` exited with 1.

My workaround for this was to reinstall postgresql 12.7.

$ brew reinstall postgresql@12
$ brew services start postgresql@12

T
Taslim Oseni

It happened for me when I was trying to start Postgres12 with postgres11 mounted volume. Just deleting the mounted volume for postgres11 and restart worked for me.

Previously I was using:

docker run -d --name my_database -v /Users/champ/postgres:/var/lib/postgresql/data -p 54320:5432 postgres:11

I deleted /Users/champ/postgres and restarted postgres 12, using

docker run -d --name my_database -v /Users/champ/postgres:/var/lib/postgresql/data -p 54320:5432 postgres:12

M
MaJeD BoJaN

brew info postgres will give you hints Like To migrate existing data from a previous major version of PostgreSQL run:

So in my case removing the old one rm -rf /usr/local/var/postgres.old and upgrading the DB brew postgresql-upgrade-database


F
FrankyHollywood

This can also occur when running a new Postgres in Docker, and your old volume isn't updated.

If you don't need to keep your data easiest is to clear the old volumes in the docker folder, in Linux that's here:

/var/lib/docker/volumes

s
stevec

A stale postmaster.pid file caused this for me.

Simply navigate to your postgres directory /Users/st/Library/Application Support/Postgres/, for me, that's:

cd '/Users/<username>/Library/Application Support/Postgres/var-10'

Then delete the file postmaster.pid. Restart postgres and it will work.


A
Alessandro

To me works with this command:

brew install --build-from-source postgresql@12

Then started Postgres:

brew services start postgresql@12

You can also check the port 5432 is listen:

netstat -nl |grep 5432

This was useful for me, turns out my issue had to do with conflicting versions of Postgres installed on my Mac