ChatGPT解决这个技术问题 Extra ChatGPT

UnicodeDecodeError when reading CSV file in Pandas with Python

I'm running a program which is processing 30,000 similar files. A random number of them are stopping and producing this error...

File "C:\Importer\src\dfman\importer.py", line 26, in import_chr
     data = pd.read_csv(filepath, names=fields)
File "C:\Python33\lib\site-packages\pandas\io\parsers.py", line 400, in parser_f
     return _read(filepath_or_buffer, kwds)
File "C:\Python33\lib\site-packages\pandas\io\parsers.py", line 205, in _read
     return parser.read()
   File "C:\Python33\lib\site-packages\pandas\io\parsers.py", line 608, in read
     ret = self._engine.read(nrows)
File "C:\Python33\lib\site-packages\pandas\io\parsers.py", line 1028, in read
     data = self._reader.read(nrows)
File "parser.pyx", line 706, in pandas.parser.TextReader.read (pandas\parser.c:6745)
File "parser.pyx", line 728, in pandas.parser.TextReader._read_low_memory (pandas\parser.c:6964)
File "parser.pyx", line 804, in pandas.parser.TextReader._read_rows (pandas\parser.c:7780)
File "parser.pyx", line 890, in pandas.parser.TextReader._convert_column_data (pandas\parser.c:8793)
File "parser.pyx", line 950, in pandas.parser.TextReader._convert_tokens (pandas\parser.c:9484)
File "parser.pyx", line 1026, in pandas.parser.TextReader._convert_with_dtype (pandas\parser.c:10642)
File "parser.pyx", line 1046, in pandas.parser.TextReader._string_convert (pandas\parser.c:10853)
File "parser.pyx", line 1278, in pandas.parser._string_box_utf8 (pandas\parser.c:15657)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xda in position 6: invalid    continuation byte

The source/creation of these files all come from the same place. What's the best way to correct this to proceed with the import?

Adding this argument worked for me: encoding_errors='ignore'
Ignoring errors should be your very last desperate resort. Similarly, randomly guessing which encoding to use might superficially remove the error, but produce total garbage in the results. If you are new to text encodings, perhaps start your next adventure with the Stack Overflow character-encoding tag info page

S
Stefan

read_csv takes an encoding option to deal with files in different formats. I mostly use read_csv('file', encoding = "ISO-8859-1"), or alternatively encoding = "utf-8" for reading, and generally utf-8 for to_csv.

You can also use one of several alias options like 'latin' or 'cp1252' (Windows) instead of 'ISO-8859-1' (see python docs, also for numerous other encodings you may encounter).

See relevant Pandas documentation, python docs examples on csv files, and plenty of related questions here on SO. A good background resource is What every developer should know about unicode and character sets.

To detect the encoding (assuming the file contains non-ascii characters), you can use enca (see man page) or file -i (linux) or file -I (osx) (see man page).


Since this is a Windows issue, cp1252 might be preferrable to iso-8859-1.
Thanks pd.read_csv('immigration.csv', encoding = "ISO-8859-1", engine='python') worked for me
Don't blindly assume a certain encoding is the right one just because no exception is thrown. You need to look at the strings and figure out whether the interpretation makes sense. For example, if you get "hors d’½uvre" instead of "hors d’œuvre" you probably need to switch from ISO-8859-1 to ISO-8859-15.
for me encoding was ANSI. To figure it out, I opened the csv in notepad then click save as, there it shows the encoding in beside the save button.
G
Gil Baggio

Simplest of all Solutions:

import pandas as pd
df = pd.read_csv('file_name.csv', engine='python')

Alternate Solution:

Open the csv file in Sublime text editor or VS Code.

Save the file in utf-8 format.

In sublime, Click File -> Save with encoding -> UTF-8

Then, you can read your file as usual:

import pandas as pd
data = pd.read_csv('file_name.csv', encoding='utf-8')

and the other different encoding types are:

encoding = "cp1252"
encoding = "ISO-8859-1"

The question explains that there are 30,000 such files. Opening each file manually would not be practical.
well at least for one file, this seemed to work for me!
The C engine is evidently more forgiving in what it accepts. For a particular CSV file that opens fine with encoding='iso-8859-1', using instead engine='python' throws _csv.Error: field larger than field limit (131072).
alternative solution to use save with encoding was really helpful! here's how to use it for VSCode stackoverflow.com/questions/30082741/…
Thanks for the tip, saving the CSV file via VS Code did the trick for me.
S
Serge Ballesta

Pandas allows to specify encoding, but does not allow to ignore errors not to automatically replace the offending bytes. So there is no one size fits all method but different ways depending on the actual use case.

You know the encoding, and there is no encoding error in the file. Great: you have just to specify the encoding: file_encoding = 'cp1252' # set file_encoding to the file encoding (utf8, latin1, etc.) pd.read_csv(input_file_and_path, ..., encoding=file_encoding) You do not want to be bothered with encoding questions, and only want that damn file to load, no matter if some text fields contain garbage. Ok, you only have to use Latin1 encoding because it accept any possible byte as input (and convert it to the unicode character of same code): pd.read_csv(input_file_and_path, ..., encoding='latin1') You know that most of the file is written with a specific encoding, but it also contains encoding errors. A real world example is an UTF8 file that has been edited with a non utf8 editor and which contains some lines with a different encoding. Pandas has no provision for a special error processing, but Python open function has (assuming Python3), and read_csv accepts a file like object. Typical errors parameter to use here are 'ignore' which just suppresses the offending bytes or (IMHO better) 'backslashreplace' which replaces the offending bytes by their Python’s backslashed escape sequence: file_encoding = 'utf8' # set file_encoding to the file encoding (utf8, latin1, etc.) input_fd = open(input_file_and_path, encoding=file_encoding, errors = 'backslashreplace') pd.read_csv(input_fd, ...)


Late answer, but targetted at a duplicate question...
b
bhavesh
with open('filename.csv') as f:
   print(f)

after executing this code you will find encoding of 'filename.csv' then execute code as following

data=pd.read_csv('filename.csv', encoding="encoding as you found earlier"

there you go


This naively assumes that Python can correctly divine the encoding where Pandas could not.
F
Fledias weh

This is a more general script approach for the stated question.

import pandas as pd

encoding_list = ['ascii', 'big5', 'big5hkscs', 'cp037', 'cp273', 'cp424', 'cp437', 'cp500', 'cp720', 'cp737'
                 , 'cp775', 'cp850', 'cp852', 'cp855', 'cp856', 'cp857', 'cp858', 'cp860', 'cp861', 'cp862'
                 , 'cp863', 'cp864', 'cp865', 'cp866', 'cp869', 'cp874', 'cp875', 'cp932', 'cp949', 'cp950'
                 , 'cp1006', 'cp1026', 'cp1125', 'cp1140', 'cp1250', 'cp1251', 'cp1252', 'cp1253', 'cp1254'
                 , 'cp1255', 'cp1256', 'cp1257', 'cp1258', 'euc_jp', 'euc_jis_2004', 'euc_jisx0213', 'euc_kr'
                 , 'gb2312', 'gbk', 'gb18030', 'hz', 'iso2022_jp', 'iso2022_jp_1', 'iso2022_jp_2'
                 , 'iso2022_jp_2004', 'iso2022_jp_3', 'iso2022_jp_ext', 'iso2022_kr', 'latin_1', 'iso8859_2'
                 , 'iso8859_3', 'iso8859_4', 'iso8859_5', 'iso8859_6', 'iso8859_7', 'iso8859_8', 'iso8859_9'
                 , 'iso8859_10', 'iso8859_11', 'iso8859_13', 'iso8859_14', 'iso8859_15', 'iso8859_16', 'johab'
                 , 'koi8_r', 'koi8_t', 'koi8_u', 'kz1048', 'mac_cyrillic', 'mac_greek', 'mac_iceland', 'mac_latin2'
                 , 'mac_roman', 'mac_turkish', 'ptcp154', 'shift_jis', 'shift_jis_2004', 'shift_jisx0213', 'utf_32'
                 , 'utf_32_be', 'utf_32_le', 'utf_16', 'utf_16_be', 'utf_16_le', 'utf_7', 'utf_8', 'utf_8_sig']

for encoding in encoding_list:
    worked = True
    try:
        df = pd.read_csv(path, encoding=encoding, nrows=5)
    except:
        worked = False
    if worked:
        print(encoding, ':\n', df.head())

One starts with all the standard encodings available for the python version (in this case 3.7 python 3.7 standard encodings). A usable python list of the standard encodings for the different python version is provided here: Helpful Stack overflow answer

Trying each encoding on a small chunk of the data; only printing the working encoding. The output is directly obvious. This output also addresses the problem that an encoding like 'latin1' that runs through with ought any error, does not necessarily produce the wanted outcome.

In case of the question, I would try this approach specific for problematic CSV file and then maybe try to use the found working encoding for all others.


You should move ISO-8859 to the end of the list, because it will succeed in every case.
P
Prakhar Rathi

Please try to add

import pandas as pd
df = pd.read_csv('file.csv', encoding='unicode_escape')

This will help. Worked for me. Also, make sure you're using the correct delimiter and column names.

You can start with loading just 1000 rows to load the file quickly.


It works for me. My csv file contains fields with double quotes
a
ah bon

Try changing the encoding. In my case, encoding = "utf-16" worked.

df = pd.read_csv("file.csv",encoding='utf-16')


with open (file) as f: encoding = f.encoding returned cp1252 for the file I was working with. However, specifying encoding = 'utf-16' is what opened the file for me without any errors. Also, I set engine = 'python'. Thanks for the suggestion.
utf-16 worked for me! All cases above - did not(
U
UserAG

In my case, a file has USC-2 LE BOM encoding, according to Notepad++. It is encoding="utf_16_le" for python.

Hope, it helps to find an answer a bit faster for someone.


J
Jan33

Try specifying the engine='python'. It worked for me but I'm still trying to figure out why.

df = pd.read_csv(input_file_path,...engine='python')

This also worked for me. So did encoding = "ISO-8859-1". It's definitely an encoding issue. If a special character is encoded in ANSI, such as an ellipse character (i.e. "..."), and you try to read it in UTF-8, you may get an error. Bottom line is you must know the encoding the file was created with.
"Encoded in ANSI" is not well-defined. The ANSI term on Windows is a misnomer, and doesn't name any specific encoding; rather, it selects a encoding defined elsewhere in the system's settings.
V
Victor Villacorta

In my case this worked for python 2.7:

data = read_csv(filename, encoding = "ISO-8859-1", dtype={'name_of_colum': unicode}, low_memory=False) 

And for python 3, only:

data = read_csv(filename, encoding = "ISO-8859-1", low_memory=False) 

D
Dileep Dominic

You can try this.

import csv
import pandas as pd
df = pd.read_csv(filepath,encoding='unicode_escape')

T
Tshilidzi Mudau

Struggled with this a while and thought I'd post on this question as it's the first search result. Adding the encoding="iso-8859-1" tag to pandas read_csv didn't work, nor did any other encoding, kept giving a UnicodeDecodeError.

If you're passing a file handle to pd.read_csv(), you need to put the encoding attribute on the file open, not in read_csv. Obvious in hindsight, but a subtle error to track down.


U
UserAG

I am posting an answer to provide an updated solution and explanation as to why this problem can occur. Say you are getting this data from a database or Excel workbook. If you have special characters like La Cañada Flintridge city, well unless you are exporting the data using UTF-8 encoding, you're going to introduce errors. La Cañada Flintridge city will become La Ca\xf1ada Flintridge city. If you are using pandas.read_csv without any adjustments to the default parameters, you'll hit the following error

UnicodeDecodeError: 'utf-8' codec can't decode byte 0xf1 in position 5: invalid continuation byte

Fortunately, there are a few solutions.

Option 1, fix the exporting. Be sure to use UTF-8 encoding.

Option 2, if fixing the exporting problem is not available to you, and you need to use pandas.read_csv, be sure to include the following paramters, engine='python'. By default, pandas uses engine='C' which is great for reading large clean files, but will crash if anything unexpected comes up. In my experience, setting encoding='utf-8' has never fixed this UnicodeDecodeError. Also, you do not need to use errors_bad_lines, however, that is still an option if you REALLY need it.

pd.read_csv(<your file>, engine='python')

Option 3: solution is my preferred solution personally. Read the file using vanilla Python.

import pandas as pd

data = []

with open(<your file>, "rb") as myfile:
    # read the header seperately
    # decode it as 'utf-8', remove any special characters, and split it on the comma (or deliminator)
    header = myfile.readline().decode('utf-8').replace('\r\n', '').split(',')
    # read the rest of the data
    for line in myfile:
        row = line.decode('utf-8', errors='ignore').replace('\r\n', '').split(',')
        data.append(row)

# save the data as a dataframe
df = pd.DataFrame(data=data, columns = header)

Hope this helps people encountering this issue for the first time.


The correct solution in this case would be to establish the correct encoding. Based on a single character, it's hard to say authoritatively, but 0xF1 corresponds to ñ in e.g. Latin-1. tripleee.github.io/8bit/#f1 has a listing of which character this byte represents in all 8-bit encodings supported by Python. errors="ignore" is a supremely bad idea if you care about the integrity of your data.
@tripleee good point, but that is a solution that is not always available. Sometimes you are given a data set with much say as to how it’s exported
I don't see how your comment is relevant. If you can export the file in a known encoding yourself, then of course you don't need to figure out the encoding. If you are given a file with an unknown encoding, figuring out which encoding it's in is vastly preferable over blindly guessing, or brutally removing any data which isn't UTF-8. This still assumes that the file is not corrupted or something,, in which case you would need to find and fix the corruption manually in addition to figuring out the correct encoding.
L
Luk Aron

I have trouble opening a CSV file in simplified Chinese downloaded from an online bank, I have tried latin1, I have tried iso-8859-1, I have tried cp1252, all to no avail.

But pd.read_csv("",encoding ='gbk') simply does the work.


None of the encodings you tried have any support for representing Chinese text. GBK is still moderately popular in China, where it is a national standard, but not used much anywhere else. See also en.wikipedia.org/wiki/GBK_(character_encoding)
C
Community

Another important issue that I faced which resulted in the same error was:

_values = pd.read_csv("C:\Users\Mujeeb\Desktop\file.xlxs")

^This line resulted in the same error because I am reading an excel file using read_csv() method. Use read_excel() for reading .xlxs


Wow, everyone else is talking about encoding issues. Looks like my issue was peculiar.
n
nbwoodward

This answer seems to be the catch-all for CSV encoding issues. If you are getting a strange encoding problem with your header like this:

>>> f = open(filename,"r")
>>> reader = DictReader(f)
>>> next(reader)
OrderedDict([('\ufeffid', '1'), ... ])

Then you have a byte order mark (BOM) character at the beginning of your CSV file. This answer addresses the issue:

Python read csv - BOM embedded into the first key

The solution is to load the CSV with encoding="utf-8-sig":

>>> f = open(filename,"r", encoding="utf-8-sig")
>>> reader = DictReader(f)
>>> next(reader)
OrderedDict([('id', '1'), ... ])

Hopefully this helps someone.


N
Nisse Engström

I am posting an update to this old thread. I found one solution that worked, but requires opening each file. I opened my csv file in LibreOffice, chose Save As > edit filter settings. In the drop-down menu I chose UTF8 encoding. Then I added encoding="utf-8-sig" to the data = pd.read_csv(r'C:\fullpathtofile\filename.csv', sep = ',', encoding="utf-8-sig").

Hope this helps someone.


Nisse, thanks for the edit. Can you please explain what you changed? I don't see a difference.
I'm not Nisse, but he added a full stop and a newline before the "Hope this helps" ending.
m
mikey

You can always try to detect the encoding of the file first, with chardet or cchardet:

from pathlib import Path
import chardet

filename = "file_name.csv"
detected = chardet.detect(Path(filename).read_bytes())
# detected is something like {'encoding': 'utf-8', 'confidence': 0.99, 'language': ''}

encoding = detected.get("encoding")
assert encoding, "Unable to detect encoding, is it a binary file?"

df = pd.read_csv(filename, encoding=encoding)


This helped me get out of tricky situation where I was assuming my json file was utf-8, but turns out it was utf-16 all along. Thanks for sharing!
H
Himanshu Sharma

I am using Jupyter-notebook. And in my case, it was showing the file in the wrong format. The 'encoding' option was not working. So I save the csv in utf-8 format, and it works.


D
DaveP

Check the encoding before you pass to pandas. It will slow you down, but...

with open(path, 'r') as f:
    encoding = f.encoding 

df = pd.read_csv(path,sep=sep, encoding=encoding)

In python 3.7


This will just fail earlier if Python is unable to divine the encoding. On modern Python 3 on non-Windows platforms, this will default to UTF-8, and fail if the file is not compatible. On Windows, this will default to whatever the system is configured to default to, so it might work if you are lucky, or produce garbage if you are less lucky.
K
Ke Xu

Try this:

import pandas as pd
with open('filename.csv') as f:
    data = pd.read_csv(f)

Looks like it will take care of the encoding without explicitly expressing it through argument


a
ah bon

You can try with:

df = pd.read_csv('./file_name.csv', encoding='gbk')


O
Om Rastogi

Sometimes the problem is with the .csv file only. The file may be corrupted. When faced with this issue. 'Save As' the file as csv again.

0. Open the xls/csv file
1. Go to -> files 
2. Click -> Save As 
3. Write the file name 
4. Choose 'file type' as -> CSV [very important]
5. Click -> Ok 

Not sure which program do you use here. Excel?
open excel file
This assumes that the CSV was generated from an Excel file, which obviously often isn't the case (and if it is, maybe you should examine your tooling choices critically).
You are right, but irrespective of the tool used to create the CSV file MS excel has the support to open CSV files, hence you can use it. Also most often CSV files are generated by the excel tool only. If this doesn't work, you can try to use some other source tool.
R
Reza Rahimi

Pandas does not automatically replace the offending bytes by changing the encoding style. In my case, changing the encoding parameter from encoding = "utf-8" to encoding = "utf-16" resolved the issue.


O
Onur Kirman

In my case, I could not manage to overcome this issue using any method provided before. Changing the encoder type to utf-8, utf-16, iso-8859-1, or any other type somehow did not work.

But instead of using pd.read_csv(filename, delimiter=';'), I used;

pd.read_csv(open(filename, 'r'), delimiter=';')

and things seem working just fine.


关注公众号,不定期副业成功案例分享
Follow WeChat

Success story sharing

Want to stay one step ahead of the latest teleworks?

Subscribe Now