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sbt-assembly: deduplication found error

I am not sure whether mergestrategy or exclude jars is the best option here. Any help with how do I proceed further with this error will be great! 

[sameert@pzxdcc0151 approxstrmatch]$ sbt assembly
[info] Loading project definition from /apps/sameert/software/approxstrmatch/project
[info] Set current project to approxstrmatch (in build file:/apps/sameert/software/approxstrmatch/)
[info] Including from cache: scala-library.jar
[info] Checking every *.class/*.jar file's SHA-1.
[info] Merging files...
[info] Including from cache: curator-client-2.4.0.jar
[info] Including from cache: secondstring-20140729.jar
[info] Including from cache: slf4j-api-1.7.5.jar
[info] Including from cache: jsr305-1.3.9.jar
[info] Including from cache: jul-to-slf4j-1.7.5.jar
[info] Including from cache: jcl-over-slf4j-1.7.5.jar
[info] Including from cache: commons-digester-1.8.jar
[info] Including from cache: compress-lzf-1.0.0.jar
[info] Including from cache: commons-beanutils-1.7.0.jar
[info] Including from cache: zookeeper-3.4.5.jar
[info] Including from cache: slf4j-log4j12-1.7.5.jar
[info] Including from cache: commons-beanutils-core-1.8.0.jar
[info] Including from cache: commons-net-2.2.jar
[info] Including from cache: commons-el-1.0.jar
[info] Including from cache: log4j-1.2.17.jar
[info] Including from cache: scala-library.jar
[info] Including from cache: jline-0.9.94.jar
[info] Including from cache: snappy-java-1.0.5.jar
[info] Including from cache: hsqldb-1.8.0.10.jar
[info] Including from cache: chill_2.10-0.3.6.jar
[info] Including from cache: oro-2.0.8.jar
[info] Including from cache: chill-java-0.3.6.jar
[info] Including from cache: kryo-2.21.jar
[info] Including from cache: reflectasm-1.07-shaded.jar
[info] Including from cache: minlog-1.2.jar
[info] Including from cache: guava-14.0.1.jar
[info] Including from cache: jetty-plus-8.1.14.v20131031.jar
[info] Including from cache: javax.transaction-1.1.1.v201105210645.jar
[info] Including from cache: jackson-mapper-asl-1.8.8.jar
[info] Including from cache: jackson-core-asl-1.8.8.jar
[info] Including from cache: jetty-webapp-8.1.14.v20131031.jar
[info] Including from cache: curator-recipes-2.4.0.jar
[info] Including from cache: jetty-xml-8.1.14.v20131031.jar
[info] Including from cache: spark-core_2.10-1.0.0.jar
[info] Including from cache: objenesis-1.2.jar
[info] Including from cache: curator-framework-2.4.0.jar
[info] Including from cache: hadoop-client-1.0.4.jar
[info] Including from cache: jetty-util-8.1.14.v20131031.jar
[info] Including from cache: scalap-2.10.4.jar
[info] Including from cache: akka-remote_2.10-2.2.3-shaded-protobuf.jar
[info] Including from cache: jetty-servlet-8.1.14.v20131031.jar
[info] Including from cache: jetty-security-8.1.14.v20131031.jar
[info] Including from cache: jetty-server-8.1.14.v20131031.jar
[info] Including from cache: javax.servlet-3.0.0.v201112011016.jar
[info] Including from cache: jetty-continuation-8.1.14.v20131031.jar
[info] Including from cache: jetty-http-8.1.14.v20131031.jar
[info] Including from cache: jetty-io-8.1.14.v20131031.jar
[info] Including from cache: hadoop-core-1.0.4.jar
[info] Including from cache: jetty-jndi-8.1.14.v20131031.jar
[info] Including from cache: xmlenc-0.52.jar
[info] Including from cache: commons-codec-1.4.jar
[info] Including from cache: javax.mail.glassfish-1.4.1.v201005082020.jar
[info] Including from cache: javax.activation-1.1.0.v201105071233.jar
[info] Including from cache: commons-math-2.1.jar
[info] Including from cache: commons-lang3-3.3.2.jar
[info] Including from cache: commons-configuration-1.6.jar
[info] Including from cache: metrics-core-3.0.0.jar
[info] Including from cache: metrics-jvm-3.0.0.jar
[info] Including from cache: metrics-json-3.0.0.jar
[info] Including from cache: commons-collections-3.2.1.jar
[info] Including from cache: metrics-graphite-3.0.0.jar
[info] Including from cache: commons-lang-2.4.jar
[info] Including from cache: akka-actor_2.10-2.2.3-shaded-protobuf.jar
[info] Including from cache: config-1.0.2.jar
[info] Including from cache: tachyon-0.4.1-thrift.jar
[info] Including from cache: netty-3.6.6.Final.jar
[info] Including from cache: protobuf-java-2.4.1-shaded.jar
[info] Including from cache: uncommons-maths-1.2.2a.jar
[info] Including from cache: akka-slf4j_2.10-2.2.3-shaded-protobuf.jar
[info] Including from cache: json4s-jackson_2.10-3.2.6.jar
[info] Including from cache: json4s-core_2.10-3.2.6.jar
[info] Including from cache: ant-1.9.0.jar
[info] Including from cache: json4s-ast_2.10-3.2.6.jar
[info] Including from cache: ant-launcher-1.9.0.jar
[info] Including from cache: paranamer-2.6.jar
[info] Including from cache: commons-io-2.4.jar
[info] Including from cache: jackson-core-2.3.0.jar
[info] Including from cache: pyrolite-2.0.1.jar
[info] Including from cache: colt-1.2.0.jar
[info] Including from cache: concurrent-1.3.4.jar
[info] Including from cache: py4j-0.8.1.jar
[info] Including from cache: mesos-0.18.1-shaded-protobuf.jar
[info] Including from cache: scala-compiler.jar
[info] Including from cache: jets3t-0.7.1.jar
[info] Including from cache: commons-httpclient-3.1.jar
[info] Including from cache: netty-all-4.0.17.Final.jar
[info] Including from cache: stream-2.5.1.jar
[info] Including from cache: scala-reflect.jar
[info] Including from cache: jackson-databind-2.3.0.jar
[info] Including from cache: jackson-annotations-2.3.0.jar
[warn] Merging 'META-INF/MANIFEST.MF' with strategy 'discard'
[warn] Strategy 'discard' was applied to a file
[info] Checking every *.class/*.jar file's SHA-1.
[info] Merging files...
[warn] Merging 'META-INF/DEPENDENCIES' with strategy 'discard'
[info] Assembly up to date: /apps/sameert/software/approxstrmatch/app/target/scala-2.10/app-assembly-0.1-SNAPSHOT.jar

// Here is where I start seeing errors: 

java.lang.RuntimeException: deduplicate: different file contents found in the following:
/home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.transaction/orbits/javax.transaction-1.1.1.v201105210645.jar:META-INF/ECLIPSEF.RSA
/home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.servlet/orbits/javax.servlet-3.0.0.v201112011016.jar:META-INF/ECLIPSEF.RSA
/home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.mail.glassfish/orbits/javax.mail.glassfish-1.4.1.v201005082020.jar:META-INF/ECLIPSEF.RSA
/home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.activation/orbits/javax.activation-1.1.0.v201105071233.jar:META-INF/ECLIPSEF.RSA
    at sbtassembly.Plugin$Assembly$.sbtassembly$Plugin$Assembly$$applyStrategy$1(Plugin.scala:253)
    at sbtassembly.Plugin$Assembly$$anonfun$15.apply(Plugin.scala:270)
    at sbtassembly.Plugin$Assembly$$anonfun$15.apply(Plugin.scala:267)
    at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:251)
    at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:251)
    at scala.collection.Iterator$class.foreach(Iterator.scala:727)
    at scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
    at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
    at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
    at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:251)
    at scala.collection.AbstractTraversable.flatMap(Traversable.scala:105)
    at sbtassembly.Plugin$Assembly$.applyStrategies(Plugin.scala:272)
    at sbtassembly.Plugin$Assembly$.x$4$lzycompute$1(Plugin.scala:172)
    at sbtassembly.Plugin$Assembly$.x$4$1(Plugin.scala:170)
    at sbtassembly.Plugin$Assembly$.stratMapping$lzycompute$1(Plugin.scala:170)
    at sbtassembly.Plugin$Assembly$.stratMapping$1(Plugin.scala:170)
    at sbtassembly.Plugin$Assembly$.inputs$lzycompute$1(Plugin.scala:214)
    at sbtassembly.Plugin$Assembly$.inputs$1(Plugin.scala:204)
    at sbtassembly.Plugin$Assembly$.apply(Plugin.scala:230)
    at sbtassembly.Plugin$Assembly$$anonfun$assemblyTask$1.apply(Plugin.scala:373)
    at sbtassembly.Plugin$Assembly$$anonfun$assemblyTask$1.apply(Plugin.scala:370)
    at scala.Function1$$anonfun$compose$1.apply(Function1.scala:47)
    at sbt.$tilde$greater$$anonfun$$u2219$1.apply(TypeFunctions.scala:42)
    at sbt.std.Transform$$anon$4.work(System.scala:64)
    at sbt.Execute$$anonfun$submit$1$$anonfun$apply$1.apply(Execute.scala:237)
    at sbt.Execute$$anonfun$submit$1$$anonfun$apply$1.apply(Execute.scala:237)
    at sbt.ErrorHandling$.wideConvert(ErrorHandling.scala:18)
    at sbt.Execute.work(Execute.scala:244)
    at sbt.Execute$$anonfun$submit$1.apply(Execute.scala:237)
    at sbt.Execute$$anonfun$submit$1.apply(Execute.scala:237)
    at sbt.ConcurrentRestrictions$$anon$4$$anonfun$1.apply(ConcurrentRestrictions.scala:160)
    at sbt.CompletionService$$anon$2.call(CompletionService.scala:30)
    at java.util.concurrent.FutureTask.run(FutureTask.java:262)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
    at java.util.concurrent.FutureTask.run(FutureTask.java:262)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
    at java.lang.Thread.run(Thread.java:744)

// Here are the error messages. 

[error] (approxstrmatch/*:assembly) deduplicate: different file contents found in the following:
[error] /home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.transaction/orbits/javax.transaction-1.1.1.v201105210645.jar:META-INF/ECLIPSEF.RSA
[error] /home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.servlet/orbits/javax.servlet-3.0.0.v201112011016.jar:META-INF/ECLIPSEF.RSA
[error] /home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.mail.glassfish/orbits/javax.mail.glassfish-1.4.1.v201005082020.jar:META-INF/ECLIPSEF.RSA
[error] /home/sameert/.ivy2/cache/org.eclipse.jetty.orbit/javax.activation/orbits/javax.activation-1.1.0.v201105071233.jar:META-INF/ECLIPSEF.RSA
[error] Total time: 4 s, completed Aug 5, 2014 9:53:06 AM

E
Elesin Olalekan Fuad

Add the code below to your build.sbt file 

assemblyMergeStrategy in assembly := {
 case PathList("META-INF", xs @ _*) => MergeStrategy.discard
 case x => MergeStrategy.first
}

This helped me a lot.

Actually I think we should just overwrite merge strategy for META-INF leaving old strategies for the rest, so: assemblyMergeStrategy in assembly := { case PathList("META-INF", xs @ _*) => MergeStrategy.discard\n case x => val oldStrategy = (assemblyMergeStrategy in assembly).value oldStrategy(x) }
You can refer to sbt-assembly/Merge Strategy for more details
Worked for me, never heard anyone about this.
Works well, but a small explaination on what it does wouldn't hurt
It was not working as it is in Play 2.5; So, I replaced assemblyMergeStrategy by mergeStrategy & it worked!
P
Prasad Khode

Use the "provided" configuration, which will scope your dependent library.

For example: 

libraryDependencies += "org.apache.spark" %% "spark-core" % "1.1.0" % "provided"

If needed, read more at

https://github.com/sbt/sbt-assembly#excluding-jars-and-files

Sorry, I had a "skip update" in a script, DOH. This did work and is significantly simpler than the other answer.
using "provided" works for me as well. it will exclude that provided dependencies and keep the jar package light. However, if the I want to pack all the dependencies/jars, how to do that?
u
user3803714 
import AssemblyKeys._

name := "approxstrmatch"

version := "1.0"

scalaVersion := "2.10.4"

// unmanagedJars in Compile += file("lib/secondstring-20140729.jar")

libraryDependencies+="org.apache.spark"%%"spark-core"%"1.0.0"

libraryDependencies ++= Seq(
    ("org.apache.spark"%%"spark-core"%"1.0.0").
    exclude("org.eclipse.jetty.orbit", "javax.servlet").
    exclude("org.eclipse.jetty.orbit", "javax.transaction").
    exclude("org.eclipse.jetty.orbit", "javax.mail").
     exclude("org.eclipse.jetty.orbit", "javax.activation").
    exclude("commons-beanutils", "commons-beanutils-core").
    exclude("commons-collections", "commons-collections").
    exclude("commons-collections", "commons-collections").
    exclude("com.esotericsoftware.minlog", "minlog")
)


resolvers += "AkkaRepository" at "http://repo.akka.io/releases/"



 lazy val app = Project("approxstrmatch", file("approxstrmatch"),
    settings = buildSettings ++ assemblySettings ++ Seq(
    mergeStrategy in assembly <<= (mergeStrategy in assembly) { (old) =>
    {
        case PathList("javax", "servlet", xs @ _*)         => MergeStrategy.first
        case PathList("javax", "transaction", xs @ _*)     => MergeStrategy.first
        case PathList("javax", "mail", xs @ _*)     => MergeStrategy.first
        case PathList("javax", "activation", xs @ _*)     => MergeStrategy.first
        case PathList(ps @ _*) if ps.last endsWith ".html" => MergeStrategy.first
        case "application.conf" => MergeStrategy.concat
        case "unwanted.txt"     => MergeStrategy.discard
        case x => old(x)
        }
    })
  )


mainClass in assembly := Some("approxstrmatch.JaccardScore")
// jarName in assembly := "approstrmatch.jar"
h
hagai

The module-info.class file has moved in many libraries. Here is the updated solution 

ThisBuild / assemblyMergeStrategy  := {
  case PathList("module-info.class") => MergeStrategy.discard
  case x if x.endsWith("/module-info.class") => MergeStrategy.discard
  case x =>
    val oldStrategy = (ThisBuild / assemblyMergeStrategy).value
    oldStrategy(x)
}

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